DNA Extraction
DNA from tail biopsies:
- Remove 0.5mm of tail into microfuge tube (do not mince)
- Add 0.5 ml DNA digestion buffer with proteinase K added to 0.5 mg/ml final concentration
- Incubate overnight at 50-55°C with gentle shaking
- Quick spin tubes to get solution off inside of cap
- Add 0.7 ml neutralized phenol/chloroform/isoamyl alcohol (25:24:1)
- Mix fairly vigorously. (Do NOT vortex--We use a clinical rotator for 1 hour)
- Spin in microfuge at top speed 5 minutes and transfer 0.5 ml of the upper phase to a new microfuge tube.
- Add 1ml 100% ethanol at room temperature and invert untill DNA precipitate forms (approx. 1 min)
- Spin in microfuge at top speed 5 minutes and carefully remove and discard supernatant
- Add 0.5-1ml 70% ethanol (-20°C) and invert several times
- Spin in microfuge at top speed 5 minutes and carefully remove and discard supernatant
- Add 0.5-1ml 70% ethanol (-20°C) and invert several times
- Spin in microfuge at top speed 5 minutes and carefully remove and discard supernatant
- Air dry at room temp. (can leave anywhere to 1 hr - overnight)
- Add 100-200ul TE buffer and incubate at 65°C for 15 min to re-suspend DNA
DNA Digestion Buffer:
- 50mM Tris-HCL pH 8.0
- 100mM EDTA pH 8.0
- 100mM NaCl
- 1% SDS